朱彥煒 Yen-Wei Chu
國立中興大學基因體暨生物資訊學研究所 Graduate Institute of Genomics ｜ 特聘教授兼所長 Distinguished Professor - Director
論文著作
Papers
1.Yen-Wei Chu* and Chang Chi-Chang (2023, Nov). Using Physical & Genomics Markers for Smart Therapy via Expert s With Computer Learning, Frontiers in Genetics, 14: 1336399. (SCI: 3.7, 引用次數: 0, 60/171). NSTC 110-2221-E-005-062-MY3, 111-2221-E-005-073-MY3, 111-2423-H-006 -002 -MY3, 112-2321-B-006-013, and 111-2634-F-005-001. 本人為第一作者&通訊作者.
2.Shih-Huan Lin, Ching-Hsuan Chien, Kai-Po Chang, Min-Fang Lu, Yu-Ting Chen, Yen-Wei Chu* (2023, May). SaBrcada: Survival Intervals Prediction for Breast Cancer Patients by Dimension Raising and Age Stratification, Cancers. 15, 3690. (SCI: 5.2, 引用次數: 0, 72/241). 本人為通訊作者. NSTC 109-2313-B-005-019, 110-2221-E-005-062-MY3, 111-2221-E-005-073-MY3, 111-2634-F-005-001, and China Medical University Hospital: DMR-112-074.
3.Jie-Hao O, Chang-Hsin Ku, Yea-Fang Wu, Guo-Cih Lin, Miin-Huey Lee, RongKuen Chen, Hau-Ping Chou, Hsin-Yuh Wu, Sheng-Chi Chu, Qiao-Juan Lai, YiChen Tsai, Chun-Chi Lin, Chien-Chih Kuo, Chung-Ta Liao, Yi-Nian Chen, Yen-Wei Chu, Chi-Yu Chen (2023, Mar). Application-oriented deep learning model for early warning of rice blast in Taiwan, Ecological Informatics. 73, 101950. (SCI: 5.1, 引用次數: 1, 27/171). Council of Agriculture, utive Yuan 111AS-5.3.1-BQ-B3 and NSTC 110-2321-B-005-005 and MOST 109-2321-B-005-024.
4.Shu-Yuan Lin, Hui-Rong Su, Chen-Cheng Lo, Shang-Min Yeh, Chi-Hung Lee, Richard Wu, Fen-Chi Lin, Yen-Wei Chu*, Shuan-Yu Huang* (2022, Mar). Effects of Extended Viewing Distance on Accommodative Response and Pupil Size of Myopic Adults by Using a Double-Mirror , Int. J. Environ. Res. Public Health, 19(5), 2942. (SCI: 4.614, 引用次數: 3, 45/182). 本人為通訊作者.
5.Ying-Hsuan Chen, Shun-Lung Chao and Yen-Wei Chu* (2022, Feb). Effects of Perceived Benefit on Vitamin D Supplementation Intention: A Theory of Planned Behaviour Perspective, Int. J. Environ. Res. Public Health, 19(4), 1952. (SCI: 4.614, 引用次數: 7, 45/182). 本人為通訊作者. NSTC 110-2221-E-005 -062 -MY3, 110-2321-B-005-005, and Changhua Christian Hospital, NCHU-CCH 11006. NSTC 110-2221-E-005-062-MY3, 110-2321-B-005-005 and 110-2634-F-005 -006, and Changhua Christian Hospital: NCHU-CCH 11006, and Kaohsiung Armed Forces General Hospital research project 106-16, and FCU/CSMU 107-002.
6.Ching-Hsuan Chien, Lan-Ying Huang, Shuen-Fang Lo, Liang-Jwu Chen, Chi-Chou Liao, Jia-Jyun Chen and Yen-Wei Chu* (2021, Dec). Using Machine Learning Approaches to Predict Target Gene Expression in Rice T-DNA ional Mutants, Frontiers in Genetics, Volume 12, 798107-798107. (SCI: 3.7, 引用次數: 2, 60/171). NSTC 110-2221-E-005-062-MY3, 110-2321-B-005-005 and National Chung Hsing University and Changhua Christian Hospital: NCHU-CCH 11006. 本人為通訊作者.
7.Chi-Hua Tung, Yi-Sheng Chang, Kai-Po Chang and Yen-Wei Chu* (2021, Aug). NIgPred: Class-Specific Antibody Prediction for Linear B-Cell Epitopes Based on Heterogeneous Features and Machine-Learning Approaches, Viruses, 13(8), 1531. (SCI: 4.7, 引用次數: 5, 15/36). MOST 109-2321-B-005-024. 本人為通訊作者. NSTC 109-2321-B-005-024, 109-2320-B-039-005, and Chung-Shan Medical University NCHU-CSMU 10911, and China Medical University Hospital DMR-109-258, and Taichung Veterans General Hospital TCVGH-NCHU-1097618, and Changhua Christian Hospital NCHU-CCH 11006.
8.Kai-Po Chang, Shih-Huan Lin, Yen-Wei Chu* (2021, Apr). Artificial intelligence in gastrointestinal radiology: A review with special focus on recent development of magnetic resonance and computed tomography, Artificial Intelligence in Gastroenterology, 2(2), 27-41. MOST 109-2321-B-005-024. (EI, 引用次數: 1). 本人為通訊作者. NSTC 109-2321-B-005-024, 109-2320-B-039-005. and Chung-Shan Medical University NCHU-CSMU 10911, and China Medical University Hospital DMR-109-258, and ChangHua Christian Hospital NCHU-CCH-11006.
9.Chi-Wei Chen, Lan-Ying Huang, Chia-Feng Liao, Kai-Po Chang* and Yen-Wei Chu* (2020, Oct). GasPhos: Protein Phosphorylation Site Prediction Using a New Feature ion Approach with a GA-Aided Ant Colony , International Journal of Molecular Sciences, 21(21), 7891. (SCI: 5.6, 引用次數: 10, 66/285). 本人為通訊作者. NSTC 109-2321-B-005-024, and Chung-Shan Medical University NCHU-CSMU 10911, China Medical University Hospital DMR-109-258, and Taichung Veterans General Hospital TCVGH-NCHU-1097618.
10.Ching-Hsuan Chien, Chi-Chang Chang, Shih-Huan Lin, Chi-Wei Chen, Zong-Han Chang and Yen-Wei Chu* (2020, Sep). N-GlycoGo: Predicting Protein N-glycosylation Sites on Imbalanced Datas by Using Heterogeneous and Comprehensive Strategy, IEEE Access, 8, 165944-165950. (SCI: 3.9, 引用次數:15, 100/275). 本人為通訊作者.
11.Yen-Wei Chu, Ching-Hsuan Chien, Mei-I Sung, Chi-Wei Chen, and Yu-Ting Chen (2020, Jun). dBMHCC: a comprehensive Hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction for novel HCC phosphorylated biomarkers, PLoS ONE, 15(6), e0234084. (SCI: 3.7, 引用次數: 10, 26/73). 本人為第一作者. NTSC 106-2313-B-005-035-MY2, 108-2321-B-005- 008 and 108-2634-F-005-002. and Chung-Shan Medical University NCHU- CSMU-10811.
12.Kai-Po Chang, John Wang, Chi-Chang Chang and Yen-Wei Chu* (2020, May). Development of a Novel Tool for the Retri and Analysis of Hormone Receptor Expression Characteristics in Metastatic Breast Cancer via Data Mining on Pathology Reports, BioMed Research International, 2020(7), 2654815. (SCI: 3.246, 引用次數: 1, 90/159). MOST 108-2321-B-005-008. 本人為通訊作者. NSTC 108-2321-B-005-008, 108-2634-F-005-002, and Chung-Shan Medical University NCHU-CSMU-10811, and China Medical University Hospital DMR-108-232.
13.Chi-Hua Tung, Ching-Hsuan Chien, Chi-Wei Chen, Lan-Ying Huang, Yu-Nan Liu and Yen-Wei Chu* (2020, Apr). QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding, PLoS ONE, 15(4), e0232087. (SCI: 3.7, 引用次數: 2, 29/134). 本人為通訊作者.
14.Chi-Wei Chen, Meng-Han Lin, Chi-Chou Liao, Hsung-Pin Chang, Yen-Wei Chu* (2020, Mar). iStable 2.0: Predicting protein thermal stability changes by integrating various characteristic modules, Computational and Structural Biotechnology Journal, 18(2020), 622-630. (SCI: 6.0, 引用次數: 77, 60/285). MOST 108-2321-B-005-008. 本人為通訊作者. NSTC 108-2321-B-005-008, 108-2634-F-005-002, and Chung-Shan Medical University NCHUCSMU-10811.
15.Jehn-Hwa Kuo, Chi-Chang Chang, Chi-Wei Chen, Heng-Hao Liang, Chih-Yen Chang, Yen-Wei Chu* (2020, Mar). Sequence-Based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features, Current Bioinformatics, 15(3), 246-252. (SCI: 4.0, 引用次數: 7, 12/55). 本人為通訊作者. Jen-Ai Hospital and Chung-Shan Medical University CSMU-JAH-105-01, and NSTC 106-2221-E-005-007-MY2, 107-2634-F-005-002 and 107-2321-B-005-013.
16.Yen-Wei Chu, Kai-Po Chang, Chi-Wei Chen, Yu-Tai Liang, Zhi Thong Soh and Li-Ching Hsieh* (2020, Jan). miRgo: integrating various off-the-shelf tools for identification of microRNA–target interactions by heterogeneous features and a novel uation indicator, Scientific Reports, 10(1), 1466. (SCI: 4.6, 引用次數: 15, 22/73). MOST 108-2321-B-005-008. 本人為第一作者. NSTC 108-2321-B-005-008, 108-2634-F-005-002, 103-2221-E-005-075, 106-2311-B-005-004-MY3, and Chung Shan Medical University NCHU-CSMU-10811.
17.Jone-Han Liu, Chi-Chang Chang, Chi-Wei Chen, Li-Ting Wong and Yen-Wei Chu* (2019, Sep). Conservation region finding for influenza A viruses by machine learning methods of N-linked glycosylation sites and B-cell epitopes, Mathematical Biosciences, 315, 108217. (SCI: 4.3, 引用次數: 9, 10/55). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002 and 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
18.Chi-Chou Liao, Liang-Jwu Chen, Shuen-Fang Lo, Chi-Wei Chen and Yen-Wei Chu* (2019, May). EAT-Rice: A predictive model for flanking gene expression of T-DNA ion activation-tagged rice mutants by machine learning approaches, PLoS Computational Biology, 15(5), e1006942. (SCI: 4.3, 引用次數: 8, 10/55). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
19.Kai-Po Chang, Yen-Wei Chu*, John Wang (2019, Feb). Analysis of Hormone Receptor Status in Primary and Recurrent Breast Cancer Via Data Mining Pathology Reports, Open Medicine, 14(1), 91-98. (SCI: 2.1, 引用次數: 9, 110/169). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005 -013, and Chung-Shan Medical University NCHU-CSMU-10705.
20.Yu-Ting Chen, Chi-Chang Chang, Chi-Wei Chen, Kuan-Chun Chen, Yen-Wei Chu* (2019, Jan). MADS-Box Gene Classification in Angiosperms by Clustering and Machine Learning Approaches, Frontiers in Genetics, 9, 707. (SCI: 3.7, 引用次數:6, 60/171). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 106-2313-B-005-035-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
21.Chi-Wei Chen, Kai-Po Chang, Cheng-Wei Ho, Hsung-Pin Chang, Yen-Wei Chu* (2018, Dec). KStable: A Computational Method for Predicting Protein Thermal Stability Changes by K-star With Regular-mRMR Feature ion, Entropy, 20(12), 988. (SCI: 2.7, 引用次數: 9, 39/111). MOST 106-2221-E-005-077-MY2. 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
22.Chi-Chang Chang, Chi-Hua Tung, Chi-Wei Chen, Chin-Hau Tu and Yen-Wei Chu* (2018, Oct). SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications, Scientific Reports, 8(1), 15512. (SCI: 4.6, 引用次數: 40, 22/73). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
23.Chi-Wei Chen, Hui-Chih Hung, Shao-yu Ho, Hsung-Pin Chang and Yen-Wei Chu* (2018, Jun). Constructing Feature Models for Citrullination Sites Prediction, Journal of Quality, 25(3), 185-195. (EI). 本人為通訊作者.
24.Quan Zou, Chi-Wei Chen, Hao-Chen Chang, Yen-Wei Chu* (2018, Jun). Identifying Cleavage Sites of Gelatinases A and B by Integrating Feature Computing Models, Journal of Universal Computer Science, 24(6), 711-724. (SCI: 1.0, 引用次數: 2, 109/145). 本人為通訊作者. MOST 106-2221-E-005-007-MY2, 107-2634-F-005-002, and Chung Shan Medical University NCHU-CSMU10612.
25.Chi-Chou Huang, Chi-Chang Chang, Chi-Wei Chen, Shao-yu Ho, Hsung-Pin Chang, Yen-Wei Chu* (2018, Feb). PClass: Protein Quaternary Structure Classification by Using Bootstrapping Strategy as Model ion, Genes, 9(2), 91. (SCI: 3.5, 引用次數: 4, 66/171). 本人為通訊作者. Chung Shan Medical University Hospital: CSH-2017-C-030, and MOST 106-2221-E-005-077-MY2.
26.Chi-Hua Tung, Pei-Wei Shueng, Yen-Wei Chu*, Chi-Wei Chen, Chian-Ying Chen (2017, Dec). Identifying Post-Translational Modification Crosstalks for Breast Cancer, Journal of Computing Science and Engineering, 11(4), 111-120. (EI). 本人為通訊作者. MOST 106-2221-E-005-077-MY2.
27.Chi-Hua Tung, Chi-Wei Chen, Han-Hao Sun, Yen-Wei Chu* (2017, Jun). Predicting human protein subcellular localization by heterogeneous and comprehensive approaches, PLoS ONE, 12(6):e0178832. (SCI: 3.7, 引用次數: 12, 29/134). 本人為通訊作者. MOST 105-2221-E-216-021.
28.Han-Ju Chien+, Yen-Wei Chu+, Chi-Wei Chen, Yu-Min Juang, Min-Wei Chien, Chih-Wei Liu, Chia-Chang Wu, Jason T.C. Tzen and Chien-Chen Lai* (2016, Nov). 2-DE combined with two-layer feature ion accurately establishes the origin of oolong tea, Food Chemistry, 211, 392-399. (SCI: 8.8, 引用次數: 10, 1/109). 本人為共同第一作者. MOST 102-2113-M-005-001-MY3.
29.Chi-Hua Tung, Chi-Wei Chen, Ren-Chao Guo, Hui-Fuang Ng, Yen-Wei Chu* (2016, Aug). QuaBingo: A Prediction for Protein Quaternary Structure Attributes Using Block Composition, BioMed Research International, 2016(10), 9480276. (SCI: 3.246, 引用次數: 7, 90/159). 本人為通訊作者. MOST 105-2221-E-216-021.
30.Chi-Wei Chen, Jerome Lin, Yen-Wei Chu* (2013) iStable: Off-the-shelf Predictor Integration for Predicting Protein Stability Changes, BMC Bioinformatics, 14(2):S5. (SCI: 3.0, 引用次數: 245, 19/55). 本人為通訊作者. NSC 100-2221-E-005-073 and NSC 101-2221-E-005-085.
31.Wei-Jie Pan, Chi-Wei Chen, Heng-Hao Liang, Yen-Wei Chu* (2012) ing High Efficacy siRNAs by Computational Models, Advanced Science Letters, 18(1), 141-144. (SCI: 1.253, 引用次數: 0, 15/59). 本人為通訊作者.
32.Chang-Hsien Yang, Yu-Yun Chang, Chi-Wei Chen, Min-Cheng Chan, Yen-Wei Chu* (2012) iMADS: The Class Identification of MADS-box Gene on Angiosperm, Advanced Science Letters, 18(1), 170-175. (SCI: 1.253, 引用次數: 1, 15/59). 本人為通訊作者.
33.Po-Chang Chang, Wei-Jie Pan, Chi-Wei Chen,Yu-Ting Chen and Yen-Wei Chu* (2012) DEsi: A design engine of siRNA that integrates SVMs prediction and feature filters, Biocatalysis and Agricultural Biotechnology, 1(SCI: 4.0, 引用次數: 8, 51/169). MOST 100-2221-E-005-073.本人為通訊作者. NSC 99–2221-E-005–099 and 100–2221-E-005–073.
34.Wei-Jie Pan, Chi-Wei Chen and Yen-Wei Chu* (2011) siPRED: Predicting siRNA efficacy using various characteristic methods, PLoS ONE, 6(11), e27602. (SCI: 3.7, 引用次數: 24, 29/134). 本人為通訊作者.
35.Yu-Yun Chang+, Yen-Wei Chu+, Chi-Wei Chen, Wei-Ming Leu, Hsing-Fun Hsu and Chang-Hsien Yang* (2011) Characterization of Oncidium ′Gower Ramsey′ Transcriptomes using 454 GS-FLX Pyrosequencing and Their Application to the Identification of Genes Associated with Flowering Time, Plant and Cell Physiology, 52(9), 1532-1545 (SCI: 4.9, 引用次數: 61, 37/239). 本人為共同第一作者.
36.Hui-Fuang Ng, Zeng-Wei Hong and Yen-Wei Chu (2008) ′Pose and Expression Invariant Face Recognition from a Single Training Sample Using Similarity Vector′, Journal of Cybernetics and s, 1(1), 21-26. (International Journal).
37.Yen-Wei Chu* and Chuen-Tsai Sun (2007) Problem-based Approach for Bioinformatics, International Journal of Instructional Media, 34(4), 441-448. (International Journal). 本人為第一作者及通訊作者.
38.Yen-Wei Chu*, Chuen-Tsai Sun, and Chung-Yuan Huang (2006) Regularity of Protein Secondary Structures and Its Prediction, WSEAS s on s, 2(5), 380-387. (EI). 本人為第一作者及通訊作者
39.Chung-Yuan Huang, Chuen-Tsai Sun and Yen Wei Chu (2006) A Co-adaptive Approach to XCS Classifier s, WSEAS s on s, 2(5), 388-394. (EI).
40.Yen-Wei Chu* and. Jinn-Moon Yang (2003) Finding Regularity in Various Types of Secondary Protein Structures, Journal of Information Science and Engineering, 19, 943-952. (SCI: 1.1, 引用次數: 7, 211/251). 本人為第一作者及通訊作者.
2.Shih-Huan Lin, Ching-Hsuan Chien, Kai-Po Chang, Min-Fang Lu, Yu-Ting Chen, Yen-Wei Chu* (2023, May). SaBrcada: Survival Intervals Prediction for Breast Cancer Patients by Dimension Raising and Age Stratification, Cancers. 15, 3690. (SCI: 5.2, 引用次數: 0, 72/241). 本人為通訊作者. NSTC 109-2313-B-005-019, 110-2221-E-005-062-MY3, 111-2221-E-005-073-MY3, 111-2634-F-005-001, and China Medical University Hospital: DMR-112-074.
3.Jie-Hao O, Chang-Hsin Ku, Yea-Fang Wu, Guo-Cih Lin, Miin-Huey Lee, RongKuen Chen, Hau-Ping Chou, Hsin-Yuh Wu, Sheng-Chi Chu, Qiao-Juan Lai, YiChen Tsai, Chun-Chi Lin, Chien-Chih Kuo, Chung-Ta Liao, Yi-Nian Chen, Yen-Wei Chu, Chi-Yu Chen (2023, Mar). Application-oriented deep learning model for early warning of rice blast in Taiwan, Ecological Informatics. 73, 101950. (SCI: 5.1, 引用次數: 1, 27/171). Council of Agriculture, utive Yuan 111AS-5.3.1-BQ-B3 and NSTC 110-2321-B-005-005 and MOST 109-2321-B-005-024.
4.Shu-Yuan Lin, Hui-Rong Su, Chen-Cheng Lo, Shang-Min Yeh, Chi-Hung Lee, Richard Wu, Fen-Chi Lin, Yen-Wei Chu*, Shuan-Yu Huang* (2022, Mar). Effects of Extended Viewing Distance on Accommodative Response and Pupil Size of Myopic Adults by Using a Double-Mirror , Int. J. Environ. Res. Public Health, 19(5), 2942. (SCI: 4.614, 引用次數: 3, 45/182). 本人為通訊作者.
5.Ying-Hsuan Chen, Shun-Lung Chao and Yen-Wei Chu* (2022, Feb). Effects of Perceived Benefit on Vitamin D Supplementation Intention: A Theory of Planned Behaviour Perspective, Int. J. Environ. Res. Public Health, 19(4), 1952. (SCI: 4.614, 引用次數: 7, 45/182). 本人為通訊作者. NSTC 110-2221-E-005 -062 -MY3, 110-2321-B-005-005, and Changhua Christian Hospital, NCHU-CCH 11006. NSTC 110-2221-E-005-062-MY3, 110-2321-B-005-005 and 110-2634-F-005 -006, and Changhua Christian Hospital: NCHU-CCH 11006, and Kaohsiung Armed Forces General Hospital research project 106-16, and FCU/CSMU 107-002.
6.Ching-Hsuan Chien, Lan-Ying Huang, Shuen-Fang Lo, Liang-Jwu Chen, Chi-Chou Liao, Jia-Jyun Chen and Yen-Wei Chu* (2021, Dec). Using Machine Learning Approaches to Predict Target Gene Expression in Rice T-DNA ional Mutants, Frontiers in Genetics, Volume 12, 798107-798107. (SCI: 3.7, 引用次數: 2, 60/171). NSTC 110-2221-E-005-062-MY3, 110-2321-B-005-005 and National Chung Hsing University and Changhua Christian Hospital: NCHU-CCH 11006. 本人為通訊作者.
7.Chi-Hua Tung, Yi-Sheng Chang, Kai-Po Chang and Yen-Wei Chu* (2021, Aug). NIgPred: Class-Specific Antibody Prediction for Linear B-Cell Epitopes Based on Heterogeneous Features and Machine-Learning Approaches, Viruses, 13(8), 1531. (SCI: 4.7, 引用次數: 5, 15/36). MOST 109-2321-B-005-024. 本人為通訊作者. NSTC 109-2321-B-005-024, 109-2320-B-039-005, and Chung-Shan Medical University NCHU-CSMU 10911, and China Medical University Hospital DMR-109-258, and Taichung Veterans General Hospital TCVGH-NCHU-1097618, and Changhua Christian Hospital NCHU-CCH 11006.
8.Kai-Po Chang, Shih-Huan Lin, Yen-Wei Chu* (2021, Apr). Artificial intelligence in gastrointestinal radiology: A review with special focus on recent development of magnetic resonance and computed tomography, Artificial Intelligence in Gastroenterology, 2(2), 27-41. MOST 109-2321-B-005-024. (EI, 引用次數: 1). 本人為通訊作者. NSTC 109-2321-B-005-024, 109-2320-B-039-005. and Chung-Shan Medical University NCHU-CSMU 10911, and China Medical University Hospital DMR-109-258, and ChangHua Christian Hospital NCHU-CCH-11006.
9.Chi-Wei Chen, Lan-Ying Huang, Chia-Feng Liao, Kai-Po Chang* and Yen-Wei Chu* (2020, Oct). GasPhos: Protein Phosphorylation Site Prediction Using a New Feature ion Approach with a GA-Aided Ant Colony , International Journal of Molecular Sciences, 21(21), 7891. (SCI: 5.6, 引用次數: 10, 66/285). 本人為通訊作者. NSTC 109-2321-B-005-024, and Chung-Shan Medical University NCHU-CSMU 10911, China Medical University Hospital DMR-109-258, and Taichung Veterans General Hospital TCVGH-NCHU-1097618.
10.Ching-Hsuan Chien, Chi-Chang Chang, Shih-Huan Lin, Chi-Wei Chen, Zong-Han Chang and Yen-Wei Chu* (2020, Sep). N-GlycoGo: Predicting Protein N-glycosylation Sites on Imbalanced Datas by Using Heterogeneous and Comprehensive Strategy, IEEE Access, 8, 165944-165950. (SCI: 3.9, 引用次數:15, 100/275). 本人為通訊作者.
11.Yen-Wei Chu, Ching-Hsuan Chien, Mei-I Sung, Chi-Wei Chen, and Yu-Ting Chen (2020, Jun). dBMHCC: a comprehensive Hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction for novel HCC phosphorylated biomarkers, PLoS ONE, 15(6), e0234084. (SCI: 3.7, 引用次數: 10, 26/73). 本人為第一作者. NTSC 106-2313-B-005-035-MY2, 108-2321-B-005- 008 and 108-2634-F-005-002. and Chung-Shan Medical University NCHU- CSMU-10811.
12.Kai-Po Chang, John Wang, Chi-Chang Chang and Yen-Wei Chu* (2020, May). Development of a Novel Tool for the Retri and Analysis of Hormone Receptor Expression Characteristics in Metastatic Breast Cancer via Data Mining on Pathology Reports, BioMed Research International, 2020(7), 2654815. (SCI: 3.246, 引用次數: 1, 90/159). MOST 108-2321-B-005-008. 本人為通訊作者. NSTC 108-2321-B-005-008, 108-2634-F-005-002, and Chung-Shan Medical University NCHU-CSMU-10811, and China Medical University Hospital DMR-108-232.
13.Chi-Hua Tung, Ching-Hsuan Chien, Chi-Wei Chen, Lan-Ying Huang, Yu-Nan Liu and Yen-Wei Chu* (2020, Apr). QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding, PLoS ONE, 15(4), e0232087. (SCI: 3.7, 引用次數: 2, 29/134). 本人為通訊作者.
14.Chi-Wei Chen, Meng-Han Lin, Chi-Chou Liao, Hsung-Pin Chang, Yen-Wei Chu* (2020, Mar). iStable 2.0: Predicting protein thermal stability changes by integrating various characteristic modules, Computational and Structural Biotechnology Journal, 18(2020), 622-630. (SCI: 6.0, 引用次數: 77, 60/285). MOST 108-2321-B-005-008. 本人為通訊作者. NSTC 108-2321-B-005-008, 108-2634-F-005-002, and Chung-Shan Medical University NCHUCSMU-10811.
15.Jehn-Hwa Kuo, Chi-Chang Chang, Chi-Wei Chen, Heng-Hao Liang, Chih-Yen Chang, Yen-Wei Chu* (2020, Mar). Sequence-Based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features, Current Bioinformatics, 15(3), 246-252. (SCI: 4.0, 引用次數: 7, 12/55). 本人為通訊作者. Jen-Ai Hospital and Chung-Shan Medical University CSMU-JAH-105-01, and NSTC 106-2221-E-005-007-MY2, 107-2634-F-005-002 and 107-2321-B-005-013.
16.Yen-Wei Chu, Kai-Po Chang, Chi-Wei Chen, Yu-Tai Liang, Zhi Thong Soh and Li-Ching Hsieh* (2020, Jan). miRgo: integrating various off-the-shelf tools for identification of microRNA–target interactions by heterogeneous features and a novel uation indicator, Scientific Reports, 10(1), 1466. (SCI: 4.6, 引用次數: 15, 22/73). MOST 108-2321-B-005-008. 本人為第一作者. NSTC 108-2321-B-005-008, 108-2634-F-005-002, 103-2221-E-005-075, 106-2311-B-005-004-MY3, and Chung Shan Medical University NCHU-CSMU-10811.
17.Jone-Han Liu, Chi-Chang Chang, Chi-Wei Chen, Li-Ting Wong and Yen-Wei Chu* (2019, Sep). Conservation region finding for influenza A viruses by machine learning methods of N-linked glycosylation sites and B-cell epitopes, Mathematical Biosciences, 315, 108217. (SCI: 4.3, 引用次數: 9, 10/55). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002 and 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
18.Chi-Chou Liao, Liang-Jwu Chen, Shuen-Fang Lo, Chi-Wei Chen and Yen-Wei Chu* (2019, May). EAT-Rice: A predictive model for flanking gene expression of T-DNA ion activation-tagged rice mutants by machine learning approaches, PLoS Computational Biology, 15(5), e1006942. (SCI: 4.3, 引用次數: 8, 10/55). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
19.Kai-Po Chang, Yen-Wei Chu*, John Wang (2019, Feb). Analysis of Hormone Receptor Status in Primary and Recurrent Breast Cancer Via Data Mining Pathology Reports, Open Medicine, 14(1), 91-98. (SCI: 2.1, 引用次數: 9, 110/169). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005 -013, and Chung-Shan Medical University NCHU-CSMU-10705.
20.Yu-Ting Chen, Chi-Chang Chang, Chi-Wei Chen, Kuan-Chun Chen, Yen-Wei Chu* (2019, Jan). MADS-Box Gene Classification in Angiosperms by Clustering and Machine Learning Approaches, Frontiers in Genetics, 9, 707. (SCI: 3.7, 引用次數:6, 60/171). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 106-2313-B-005-035-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
21.Chi-Wei Chen, Kai-Po Chang, Cheng-Wei Ho, Hsung-Pin Chang, Yen-Wei Chu* (2018, Dec). KStable: A Computational Method for Predicting Protein Thermal Stability Changes by K-star With Regular-mRMR Feature ion, Entropy, 20(12), 988. (SCI: 2.7, 引用次數: 9, 39/111). MOST 106-2221-E-005-077-MY2. 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
22.Chi-Chang Chang, Chi-Hua Tung, Chi-Wei Chen, Chin-Hau Tu and Yen-Wei Chu* (2018, Oct). SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications, Scientific Reports, 8(1), 15512. (SCI: 4.6, 引用次數: 40, 22/73). 本人為通訊作者. MOST 106-2221-E-005-077-MY2, 107-2634-F-005-002, 107-2321-B-005-013, and Chung-Shan Medical University NCHU-CSMU-10705.
23.Chi-Wei Chen, Hui-Chih Hung, Shao-yu Ho, Hsung-Pin Chang and Yen-Wei Chu* (2018, Jun). Constructing Feature Models for Citrullination Sites Prediction, Journal of Quality, 25(3), 185-195. (EI). 本人為通訊作者.
24.Quan Zou, Chi-Wei Chen, Hao-Chen Chang, Yen-Wei Chu* (2018, Jun). Identifying Cleavage Sites of Gelatinases A and B by Integrating Feature Computing Models, Journal of Universal Computer Science, 24(6), 711-724. (SCI: 1.0, 引用次數: 2, 109/145). 本人為通訊作者. MOST 106-2221-E-005-007-MY2, 107-2634-F-005-002, and Chung Shan Medical University NCHU-CSMU10612.
25.Chi-Chou Huang, Chi-Chang Chang, Chi-Wei Chen, Shao-yu Ho, Hsung-Pin Chang, Yen-Wei Chu* (2018, Feb). PClass: Protein Quaternary Structure Classification by Using Bootstrapping Strategy as Model ion, Genes, 9(2), 91. (SCI: 3.5, 引用次數: 4, 66/171). 本人為通訊作者. Chung Shan Medical University Hospital: CSH-2017-C-030, and MOST 106-2221-E-005-077-MY2.
26.Chi-Hua Tung, Pei-Wei Shueng, Yen-Wei Chu*, Chi-Wei Chen, Chian-Ying Chen (2017, Dec). Identifying Post-Translational Modification Crosstalks for Breast Cancer, Journal of Computing Science and Engineering, 11(4), 111-120. (EI). 本人為通訊作者. MOST 106-2221-E-005-077-MY2.
27.Chi-Hua Tung, Chi-Wei Chen, Han-Hao Sun, Yen-Wei Chu* (2017, Jun). Predicting human protein subcellular localization by heterogeneous and comprehensive approaches, PLoS ONE, 12(6):e0178832. (SCI: 3.7, 引用次數: 12, 29/134). 本人為通訊作者. MOST 105-2221-E-216-021.
28.Han-Ju Chien+, Yen-Wei Chu+, Chi-Wei Chen, Yu-Min Juang, Min-Wei Chien, Chih-Wei Liu, Chia-Chang Wu, Jason T.C. Tzen and Chien-Chen Lai* (2016, Nov). 2-DE combined with two-layer feature ion accurately establishes the origin of oolong tea, Food Chemistry, 211, 392-399. (SCI: 8.8, 引用次數: 10, 1/109). 本人為共同第一作者. MOST 102-2113-M-005-001-MY3.
29.Chi-Hua Tung, Chi-Wei Chen, Ren-Chao Guo, Hui-Fuang Ng, Yen-Wei Chu* (2016, Aug). QuaBingo: A Prediction for Protein Quaternary Structure Attributes Using Block Composition, BioMed Research International, 2016(10), 9480276. (SCI: 3.246, 引用次數: 7, 90/159). 本人為通訊作者. MOST 105-2221-E-216-021.
30.Chi-Wei Chen, Jerome Lin, Yen-Wei Chu* (2013) iStable: Off-the-shelf Predictor Integration for Predicting Protein Stability Changes, BMC Bioinformatics, 14(2):S5. (SCI: 3.0, 引用次數: 245, 19/55). 本人為通訊作者. NSC 100-2221-E-005-073 and NSC 101-2221-E-005-085.
31.Wei-Jie Pan, Chi-Wei Chen, Heng-Hao Liang, Yen-Wei Chu* (2012) ing High Efficacy siRNAs by Computational Models, Advanced Science Letters, 18(1), 141-144. (SCI: 1.253, 引用次數: 0, 15/59). 本人為通訊作者.
32.Chang-Hsien Yang, Yu-Yun Chang, Chi-Wei Chen, Min-Cheng Chan, Yen-Wei Chu* (2012) iMADS: The Class Identification of MADS-box Gene on Angiosperm, Advanced Science Letters, 18(1), 170-175. (SCI: 1.253, 引用次數: 1, 15/59). 本人為通訊作者.
33.Po-Chang Chang, Wei-Jie Pan, Chi-Wei Chen,Yu-Ting Chen and Yen-Wei Chu* (2012) DEsi: A design engine of siRNA that integrates SVMs prediction and feature filters, Biocatalysis and Agricultural Biotechnology, 1(SCI: 4.0, 引用次數: 8, 51/169). MOST 100-2221-E-005-073.本人為通訊作者. NSC 99–2221-E-005–099 and 100–2221-E-005–073.
34.Wei-Jie Pan, Chi-Wei Chen and Yen-Wei Chu* (2011) siPRED: Predicting siRNA efficacy using various characteristic methods, PLoS ONE, 6(11), e27602. (SCI: 3.7, 引用次數: 24, 29/134). 本人為通訊作者.
35.Yu-Yun Chang+, Yen-Wei Chu+, Chi-Wei Chen, Wei-Ming Leu, Hsing-Fun Hsu and Chang-Hsien Yang* (2011) Characterization of Oncidium ′Gower Ramsey′ Transcriptomes using 454 GS-FLX Pyrosequencing and Their Application to the Identification of Genes Associated with Flowering Time, Plant and Cell Physiology, 52(9), 1532-1545 (SCI: 4.9, 引用次數: 61, 37/239). 本人為共同第一作者.
36.Hui-Fuang Ng, Zeng-Wei Hong and Yen-Wei Chu (2008) ′Pose and Expression Invariant Face Recognition from a Single Training Sample Using Similarity Vector′, Journal of Cybernetics and s, 1(1), 21-26. (International Journal).
37.Yen-Wei Chu* and Chuen-Tsai Sun (2007) Problem-based Approach for Bioinformatics, International Journal of Instructional Media, 34(4), 441-448. (International Journal). 本人為第一作者及通訊作者.
38.Yen-Wei Chu*, Chuen-Tsai Sun, and Chung-Yuan Huang (2006) Regularity of Protein Secondary Structures and Its Prediction, WSEAS s on s, 2(5), 380-387. (EI). 本人為第一作者及通訊作者
39.Chung-Yuan Huang, Chuen-Tsai Sun and Yen Wei Chu (2006) A Co-adaptive Approach to XCS Classifier s, WSEAS s on s, 2(5), 388-394. (EI).
40.Yen-Wei Chu* and. Jinn-Moon Yang (2003) Finding Regularity in Various Types of Secondary Protein Structures, Journal of Information Science and Engineering, 19, 943-952. (SCI: 1.1, 引用次數: 7, 211/251). 本人為第一作者及通訊作者.